Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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Gene: C9H9orf153 ENSPTRG00000029236

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Description

chromosome 9 C9orf153 homolog [Source:VGNC Symbol;Acc:VGNC:14376]

Location

Chromosome 9: 63,501,297-63,510,701 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 2 transcripts (splice variants) and 44 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000080295.1	C9H9orf153-201	2077	264aa	ENSPTRP00000062724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RDH8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000056499.2	C9H9orf153-202	306	101aa	ENSPTRP00000049251.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R6M0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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