Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: KDM5D ENSPTRG00000022503

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Description

lysine demethylase 5D [Source:VGNC Symbol;Acc:VGNC:49003]

Location

Chromosome Y: 18,096,757-18,135,928 forward strand.

Pan_tro_3.0:DP000054.3

About this gene

This gene has 4 transcripts (splice variants), 159 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000097701.1	KDM5D-202	4701	1566aa	ENSPTRP00000082881.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0W1 A0A6D2YAT7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000042025.4	KDM5D-201	5317	1478aa	ENSPTRP00000038793.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X2L3 H2QZC9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079046.1	KDM5D-204	1869	622aa	ENSPTRP00000072924.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S8T8	-
ENSPTRT00000108855.1	KDM5D-203	1131	376aa	ENSPTRP00000089127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TIP1	-

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Summary

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