Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: UPF3B ENSPTRG00000022228

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Description

UPF3B regulator of nonsense mediated mRNA decay [Source:VGNC Symbol;Acc:VGNC:14820]

Location

Chromosome X: 119,505,432-119,525,009 reverse strand.

Pan_tro_3.0:CM000336.3

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000041431.5	UPF3B-202	2422	483aa	ENSPTRP00000038268.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XS14 H2QZ21	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000089938.1	UPF3B-201	2381	470aa	ENSPTRP00000071758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S481 A0A6D2WK94	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000100063.1	UPF3B-203	957	318aa	ENSPTRP00000092686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTY4	-
ENSPTRT00000077480.1	UPF3B-204	591	196aa	ENSPTRP00000092294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TSQ7	-

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Summary

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