Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SH2D3C ENSPTRG00000021397

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Description

SH2 domain containing 3C [Source:VGNC Symbol;Acc:VGNC:4862]

Location

Chromosome 9: 105,853,166-105,894,191 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 6 transcripts (splice variants), 275 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000039587.6	SH2D3C-201	3671	860aa	ENSPTRP00000036571.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WYY5 H2QXX7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101473.1	SH2D3C-203	4948	506aa	ENSPTRP00000077455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLT1 A0A6D2W0R7	-
ENSPTRT00000084504.1	SH2D3C-202	2769	703aa	ENSPTRP00000062842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3REM6 A0A6D2XCD6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000088561.1	SH2D3C-204	2710	702aa	ENSPTRP00000078552.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNG9 A0A6D2XLC1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000083019.1	SH2D3C-205	2376	791aa	ENSPTRP00000087601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TEB1	-
ENSPTRT00000110493.1	SH2D3C-206	2094	697aa	ENSPTRP00000062567.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RD51	-

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Summary

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