Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: LRSAM1 ENSPTRG00000021390

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Description

leucine rich repeat and sterile alpha motif containing 1 [Source:VGNC Symbol;Acc:VGNC:13941]

Location

Chromosome 9: 105,567,792-105,619,607 forward strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 3 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000048837.5	LRSAM1-201	3141	722aa	ENSPTRP00000043808.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8NBT4 A0A6D2WTS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000099417.1	LRSAM1-202	3060	695aa	ENSPTRP00000083599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T313 A0A6D2W851	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081504.1	LRSAM1-203	2139	712aa	ENSPTRP00000082077.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SZQ1	-

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Summary

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