Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX6 ENSPTRG00000021322

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Description

LIM homeobox 6 [Source:VGNC Symbol;Acc:VGNC:13909]

Location

Chromosome 9: 100,257,497-100,283,814 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 4 transcripts (splice variants), 271 orthologues and 21 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000078882.1	LHX6-204	1287	428aa	ENSPTRP00000085026.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T722	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000039440.6	LHX6-201	3405	377aa	ENSPTRP00000036443.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X4Z5 H2QXT7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000080627.1	LHX6-202	3321	366aa	ENSPTRP00000063842.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RGU2 A0A6D2W484	-
ENSPTRT00000091085.1	LHX6-203	1179	392aa	ENSPTRP00000071948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S539 A0A6D2XRM1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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