Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: EFR3A ENSPTRG00000020591

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Description

EFR3 homolog A [Source:VGNC Symbol;Acc:VGNC:885]

Location

Chromosome 8: 134,367,912-134,477,313 forward strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 5 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000099525.1	EFR3A-203	2547	848aa	ENSPTRP00000067767.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTX0 A0A6D2WFA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000099644.1	EFR3A-202	6811	785aa	ENSPTRP00000074918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SD01 A0A6D2VX69	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000021826.5	EFR3A-201	5317	821aa	ENSPTRP00000020133.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XI20 H2QHJ8	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000087939.1	EFR3A-204	2538	845aa	ENSPTRP00000070703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S292	-
ENSPTRT00000086393.1	EFR3A-205	2487	828aa	ENSPTRP00000073141.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S8I0	-

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Summary

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