Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRKDC ENSPTRG00000020229

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Description

protein kinase, DNA-activated, catalytic subunit [Source:VGNC Symbol;Acc:VGNC:56710]

Location

Chromosome 8: 48,621,758-48,808,204 reverse strand.

Pan_tro_3.0:CM000322.4

About this gene

This gene has 2 transcripts (splice variants), 178 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000050339.4	PRKDC-201	13499	4128aa	ENSPTRP00000045268.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R3C3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000091088.1	PRKDC-202	13406	4097aa	ENSPTRP00000068145.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RU52	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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