Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
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ID History
- Gene history

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Gene: PODXL ENSPTRG00000019705

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Description

podocalyxin like [Source:VGNC Symbol;Acc:VGNC:8735]

Location

Chromosome 7: 136,053,401-136,109,727 reverse strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 3 transcripts (splice variants) and 162 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000077035.1	PODXL-202	1671	556aa	ENSPTRP00000073254.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S9S7 A0A6D2XKJ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000043639.5	PODXL-201	5864	524aa	ENSPTRP00000046144.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y2B4 H2R3V9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077311.1	PODXL-203	1563	520aa	ENSPTRP00000067671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSL1	-

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Summary

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