Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN12 ENSPTRG00000019337

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Description

protein tyrosine phosphatase non-receptor type 12 [Source:VGNC Symbol;Acc:VGNC:4484]

Location

Chromosome 7: 80,312,803-80,417,436 forward strand.

Pan_tro_3.0:CM000321.4

About this gene

This gene has 3 transcripts (splice variants), 136 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000035781.6	PTPN12-201	3481	780aa	ENSPTRP00000033071.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y6D9 H2QUU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000076644.1	PTPN12-203	3148	650aa	ENSPTRP00000084585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T5T0 A0A6D2VWB4	-
ENSPTRT00000088456.1	PTPN12-202	1176	391aa	ENSPTRP00000089872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKW8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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