Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
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External references
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ID History
- Gene history

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Gene: AFDN ENSPTRG00000018810

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Description

afadin, adherens junction formation factor [Source:VGNC Symbol;Acc:VGNC:14790]

Location

Chromosome 6: 172,393,689-172,539,434 forward strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 5 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000106022.1	AFDN-203	5505	1834aa	ENSPTRP00000061867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RB42 A0A6D2VX11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000067597.3	AFDN-201	8275	1651aa	ENSPTRP00000059182.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WU40 H2RDP8	-
ENSPTRT00000080356.1	AFDN-202	7762	1824aa	ENSPTRP00000064099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RHG5 A0A6D2WT78	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000084782.1	AFDN-204	5496	1831aa	ENSPTRP00000074188.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAV4 A0A6D2XBR2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000083695.1	AFDN-205	5262	1753aa	ENSPTRP00000093699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7B0C3	-

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Summary

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