Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRKN ENSPTRG00000018781

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Description

parkin RBR E3 ubiquitin protein ligase [Source:VGNC Symbol;Acc:VGNC:13029]

Gene Synonyms

PARK2

Location

Chromosome 6: 165,705,214-167,129,588 reverse strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 7 transcripts (splice variants), 233 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000034690.3	PRKN-201	1398	465aa	ENSPTRP00000032068.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XY08 H2QU08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000081464.1	PRKN-202	1314	437aa	ENSPTRP00000067464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRZ1 A0A6D2VZ87	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000087532.1	PRKN-204	1165	191aa	ENSPTRP00000084072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4B0	-
ENSPTRT00000091098.1	PRKN-205	1107	368aa	ENSPTRP00000071436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S3C3 A0A6D2X7M5	-
ENSPTRT00000086055.1	PRKN-203	951	316aa	ENSPTRP00000068865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RX24 A0A6D2W0R0	-
ENSPTRT00000083842.1	PRKN-207	561	187aa	ENSPTRP00000083799.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T3J7	-
ENSPTRT00000104343.1	PRKN-206	261	87aa	ENSPTRP00000077745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLA2 A0A6D2VSQ2	-

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Summary

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