Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SYNE1 ENSPTRG00000018717

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Description

spectrin repeat containing nuclear envelope protein 1 [Source:VGNC Symbol;Acc:VGNC:13035]

Location

Chromosome 6: 156,253,670-156,777,918 reverse strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 9 transcripts (splice variants), 300 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000034550.6	SYNE1-201	27739	8797aa	ENSPTRP00000031935.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QTX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000100772.1	SYNE1-204	26301	8766aa	ENSPTRP00000075177.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SFA3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000094431.1	SYNE1-205	26250	8749aa	ENSPTRP00000083670.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T475	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000093219.1	SYNE1-206	25032	8343aa	ENSPTRP00000083798.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T3J8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000103658.1	SYNE1-203	24981	8326aa	ENSPTRP00000061536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RA74	-
ENSPTRT00000088600.1	SYNE1-207	4302	1433aa	ENSPTRP00000061722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RAQ3 A0A6D2XRD9	-
ENSPTRT00000091718.1	SYNE1-202	2928	975aa	ENSPTRP00000090867.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TPK8 A0A6D2XPA2	-
ENSPTRT00000097304.1	SYNE1-208	1839	612aa	ENSPTRP00000070651.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S104 A0A6D2WZ44	-
ENSPTRT00000104744.1	SYNE1-209	1428	475aa	ENSPTRP00000065111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RL87	-

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Summary

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