Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Ontologies
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Genetic Variation
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Gene: VTA1 ENSPTRG00000018662

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Description

vesicle trafficking 1 [Source:VGNC Symbol;Acc:VGNC:10019]

Location

Chromosome 6: 146,134,800-146,208,500 forward strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 4 transcripts (splice variants) and 203 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000034458.5	VTA1-201	3348	307aa	ENSPTRP00000031849.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y222 H2QTU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000106282.1	VTA1-202	843	280aa	ENSPTRP00000086104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TB54 A0A6D2X172	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000095681.1	VTA1-203	750	249aa	ENSPTRP00000075515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SGA4 A0A6D2XJJ7	-
ENSPTRT00000080721.1	VTA1-204	747	248aa	ENSPTRP00000070142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZL8	-

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Summary

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