Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM1 ENSPTRG00000018457

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Description

PR/SET domain 1 [Source:VGNC Symbol;Acc:VGNC:7905]

Location

Chromosome 6: 109,527,193-109,551,122 forward strand.

Pan_tro_3.0:CM000320.3

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues and 38 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000034108.4	PRDM1-201	5467	825aa	ENSPTRP00000031523.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2YAN8 H2QTH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000088672.1	PRDM1-202	6133	789aa	ENSPTRP00000087119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8PUQ8 A0A6D2WS03	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077124.1	PRDM1-203	4806	691aa	ENSPTRP00000090362.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TMA0 A0A6D2XJW1	-

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Summary

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