Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TNIP1 ENSPTRG00000017428

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Description

TNFAIP3 interacting protein 1 [Source:VGNC Symbol;Acc:VGNC:4206]

Location

Chromosome 5: 151,231,747-151,283,672 reverse strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 5 transcripts (splice variants), 202 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000082718.1	TNIP1-204	1938	645aa	ENSPTRP00000076472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SHK0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000080015.1	TNIP1-201	3763	636aa	ENSPTRP00000067669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSQ5 A0A6D2XYE7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000032235.6	TNIP1-202	2519	572aa	ENSPTRP00000029779.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8NJQ8 A0A6D2Y2Y7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000085649.1	TNIP1-203	1671	556aa	ENSPTRP00000064259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8NJQ7 A0A6D2XR88	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000098073.1	TNIP1-205	1479	492aa	ENSPTRP00000080788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SW35 A0A6D2WVX0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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