Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMN2 ENSPTRG00000016955

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Description

survival of motor neuron 2, centromeric [Source:UniProtKB Gene Name;Acc:A0A2I3SG05]

Location

Chromosome 5: 44,603,143-44,630,364 forward strand.

Pan_tro_3.0:CM000319.3

About this gene

This gene has 6 transcripts (splice variants), 221 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000084001.1	SMN2-201	1067	297aa	ENSPTRP00000090139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TMK9 A0A6D2Y3P5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000090537.1	SMN2-202	962	262aa	ENSPTRP00000064572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W7V6 K7BPE5	-
ENSPTRT00000088111.1	SMN2-204	894	297aa	ENSPTRP00000068113.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8L0U3 A0A6D2WZ32	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000091690.1	SMN2-206	858	285aa	ENSPTRP00000083515.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T3Q2 A0A6D2XLZ6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000031451.5	SMN2-203	855	285aa	ENSPTRP00000029048.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QR14	-
ENSPTRT00000101315.1	SMN2-205	693	230aa	ENSPTRP00000075974.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SG05 A0A6D2WRM4	-

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Summary

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