Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS8 ENSPTRG00000015698

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Description

VPS8 subunit of CORVET complex [Source:VGNC Symbol;Acc:VGNC:2628]

Location

Chromosome 3: 188,856,518-189,108,573 forward strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 7 transcripts (splice variants), 218 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000110098.1	VPS8-201	5055	1428aa	ENSPTRP00000078274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SML3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000029266.6	VPS8-203	4287	1428aa	ENSPTRP00000027011.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W7S1 H2QNW1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000098470.1	VPS8-204	4254	1417aa	ENSPTRP00000074806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCV8	-
ENSPTRT00000082461.1	VPS8-205	4239	1412aa	ENSPTRP00000070251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZV3	-
ENSPTRT00000110587.1	VPS8-206	4011	1336aa	ENSPTRP00000091811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TS62 A0A6D2W3M5	-
ENSPTRT00000079110.1	VPS8-207	708	235aa	ENSPTRP00000092691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TTZ0	-
ENSPTRT00000081066.1	VPS8-202	207	68aa	ENSPTRP00000065822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8M5Q0 A0A6D2XSY5	-

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Summary

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