Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HCLS1 ENSPTRG00000015279

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Description

hematopoietic cell-specific Lyn substrate 1 [Source:UniProtKB Gene Name;Acc:A0A2I3TDZ0]

Location

Chromosome 3: 124,795,785-124,822,339 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 4 transcripts (splice variants), 200 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000028535.3	HCLS1-201	1904	484aa	ENSPTRP00000026335.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W183 H2QN71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101794.1	HCLS1-202	1793	447aa	ENSPTRP00000069803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RYK6 A0A6D2WJ26	-
ENSPTRT00000097510.1	HCLS1-203	1425	474aa	ENSPTRP00000087465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TDZ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081933.1	HCLS1-204	1347	448aa	ENSPTRP00000076824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SIJ0	-

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Summary

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