Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TMF1 ENSPTRG00000015094

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Description

TATA element modulatory factor 1 [Source:VGNC Symbol;Acc:VGNC:12213]

Location

Chromosome 3: 70,346,438-70,378,940 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 3 transcripts (splice variants), 204 orthologues and 46 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000080989.1	TMF1-201	5472	1096aa	ENSPTRP00000084478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7C054	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000067767.2	TMF1-202	6876	1093aa	ENSPTRP00000059355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W3W0 H2RDU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000110744.1	TMF1-203	2328	775aa	ENSPTRP00000076871.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SIJ5 A0A6D2XKI3	-

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Summary

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