Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP4 ENSPTRG00000014920

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Description

ubiquitin specific peptidase 4 [Source:VGNC Symbol;Acc:VGNC:10047]

Location

Chromosome 3: 50,348,083-50,414,740 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 6 transcripts (splice variants), 133 orthologues and 56 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000027927.4	USP4-202	3719	962aa	ENSPTRP00000025757.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WN86 H2QML3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101383.1	USP4-203	3748	907aa	ENSPTRP00000070714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S146	-
ENSPTRT00000079323.1	USP4-201	3577	915aa	ENSPTRP00000092578.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XNE5 K7CG48	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000080902.1	USP4-204	2715	904aa	ENSPTRP00000077215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SJM5	-
ENSPTRT00000087895.1	USP4-205	1659	312aa	ENSPTRP00000087861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TG77 A0A6D2WYL5	-
ENSPTRT00000095130.1	USP4-206	1656	362aa	ENSPTRP00000093080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TUX3 A0A6D2WBT3	-

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Summary

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