Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SATB1 ENSPTRG00000014677

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Description

SATB homeobox 1 [Source:VGNC Symbol;Acc:VGNC:2546]

Location

Chromosome 3: 18,782,698-18,879,516 reverse strand.

Pan_tro_3.0:CM000317.3

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000084390.1	SATB1-201	3700	795aa	ENSPTRP00000073347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S8J9 A0A6D2WDE4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000027458.6	SATB1-202	5315	763aa	ENSPTRP00000025318.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WH45 H2QM59	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000103679.1	SATB1-204	535	82aa	ENSPTRP00000070049.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZ93 A0A6D2W135	-
ENSPTRT00000094143.1	SATB1-203	417	138aa	ENSPTRP00000075150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SDP1 A0A6D2WYC0	-

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Summary

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