Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CTCFL ENSPTRG00000013663

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Description

CCCTC-binding factor like [Source:VGNC Symbol;Acc:VGNC:14426]

Location

Chromosome 20: 59,485,590-59,515,450 reverse strand.

Pan_tro_3.0:CM000334.4

About this gene

This gene has 8 transcripts (splice variants), 396 orthologues and 42 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000025459.6	CTCFL-201	2103	700aa	ENSPTRP00000023498.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XH96 H2QKN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000088525.1	CTCFL-202	4084	613aa	ENSPTRP00000088323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TGH3 A0A6D2XE72	-
ENSPTRT00000087582.1	CTCFL-203	3778	663aa	ENSPTRP00000063146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JCD6 A0A6D2WP24	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000097598.1	CTCFL-204	2247	461aa	ENSPTRP00000074044.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAI1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000078438.1	CTCFL-205	2001	666aa	ENSPTRP00000068546.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RV93 A0A6D2XXL0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000098887.1	CTCFL-206	1884	627aa	ENSPTRP00000065656.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RLY0	-
ENSPTRT00000082733.1	CTCFL-208	1722	573aa	ENSPTRP00000074495.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SBR9	-
ENSPTRT00000081059.1	CTCFL-207	1452	483aa	ENSPTRP00000064531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RIQ3	-

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Summary

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