Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NSFL1C ENSPTRG00000013164

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Description

NSFL1 cofactor [Source:VGNC Symbol;Acc:VGNC:10156]

Location

Chromosome 20: 1,343,414-1,369,108 reverse strand.

Pan_tro_3.0:CM000334.4

About this gene

This gene has 6 transcripts (splice variants), 214 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000101507.1	NSFL1C-202	1119	372aa	ENSPTRP00000077674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X8E8 K7BL36	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000059341.4	NSFL1C-201	3689	370aa	ENSPTRP00000052472.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XSA8 H2R963	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000091581.1	NSFL1C-203	1074	357aa	ENSPTRP00000073654.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S9I9	-
ENSPTRT00000080057.1	NSFL1C-204	1020	339aa	ENSPTRP00000082820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0R7 A0A6D2W4V6	-
ENSPTRT00000081251.1	NSFL1C-205	822	273aa	ENSPTRP00000062926.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RE71	-
ENSPTRT00000079289.1	NSFL1C-206	318	105aa	ENSPTRP00000077792.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLA3 A0A6D2Y6V8	-

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Summary

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