Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC4 ENSPTRG00000013097

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Description

histone deacetylase 4 [Source:VGNC Symbol;Acc:VGNC:1957]

Location

Chromosome 2B: 130,200,240-130,509,406 reverse strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 5 transcripts (splice variants), 265 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000082038.1	HDAC4-204	3270	1089aa	ENSPTRP00000073000.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S7H7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000024291.4	HDAC4-201	8104	972aa	ENSPTRP00000022412.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W9C5 H2QJQ3	-
ENSPTRT00000103962.1	HDAC4-202	3474	1084aa	ENSPTRP00000074061.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAQ2 A0A6D2VZA0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000093106.1	HDAC4-203	3402	1060aa	ENSPTRP00000090261.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TLX6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000103848.1	HDAC4-205	3177	1058aa	ENSPTRP00000088892.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TI25	-

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Summary

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