Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SP140 ENSPTRG00000013010

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Description

SP140 nuclear body protein [Source:VGNC Symbol;Acc:VGNC:2816]

Location

Chromosome 2B: 121,300,686-121,388,073 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 7 transcripts (splice variants), 100 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000099872.1	SP140-202	3249	866aa	ENSPTRP00000092921.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TUL5 A0A6D2WNJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000024122.6	SP140-203	3166	839aa	ENSPTRP00000022247.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VWS1 H2QJK3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079176.1	SP140-207	2547	848aa	ENSPTRP00000089739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TKH8	-
ENSPTRT00000078547.1	SP140-204	2421	806aa	ENSPTRP00000077986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SN91 A0A6D2XK32	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000110090.1	SP140-205	2259	752aa	ENSPTRP00000065457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RL97 A0A6D2VWD1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000092627.1	SP140-206	1404	467aa	ENSPTRP00000067573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RSF0	-
ENSPTRT00000094394.1	SP140-201	1079	171aa	ENSPTRP00000084235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4R9 A0A6D2W0C9	-

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Summary

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