Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TNS1 ENSPTRG00000012906

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Description

tensin 1 [Source:VGNC Symbol;Acc:VGNC:2892]

Location

Chromosome 2B: 108,702,548-108,848,212 reverse strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 7 transcripts (splice variants), 218 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000023926.5	TNS1-204	5223	1740aa	ENSPTRP00000022062.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QJD8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000095319.1	TNS1-201	10316	1734aa	ENSPTRP00000080648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SUI0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000102431.1	TNS1-202	10215	1713aa	ENSPTRP00000074045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SAN4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000080821.1	TNS1-203	9826	1720aa	ENSPTRP00000086144.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TB89	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000090044.1	TNS1-205	2541	846aa	ENSPTRP00000085554.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T9J6 A0A6D2XJB6	-
ENSPTRT00000096081.1	TNS1-206	2532	843aa	ENSPTRP00000089907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TL04	-
ENSPTRT00000091323.1	TNS1-207	1251	416aa	ENSPTRP00000078152.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SMB9 A0A6D2X7C0	-

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Summary

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