Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PMS1 ENSPTRG00000012737

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Description

PMS1 homolog 1, mismatch repair system component [Source:VGNC Symbol;Acc:VGNC:2786]

Location

Chromosome 2B: 80,332,115-80,426,247 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 8 transcripts (splice variants), 210 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000098471.1	PMS1-201	3698	932aa	ENSPTRP00000066616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RPI6 A0A6D2WE62	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000023609.4	PMS1-204	3398	893aa	ENSPTRP00000021775.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WMT7 H2QJ52	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000085368.1	PMS1-202	3212	770aa	ENSPTRP00000071087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S275 A0A6D2WX72	-
ENSPTRT00000085291.1	PMS1-206	2004	667aa	ENSPTRP00000086553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TBE6 A0A6D2VY95	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000085325.1	PMS1-208	1938	645aa	ENSPTRP00000066868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRB5	-
ENSPTRT00000079494.1	PMS1-203	1548	165aa	ENSPTRP00000071043.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S279 A0A6D2WDF3	-
ENSPTRT00000101964.1	PMS1-205	747	248aa	ENSPTRP00000089278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TJ43 A0A6D2X9Z9	-
ENSPTRT00000088713.1	PMS1-207	546	181aa	ENSPTRP00000075569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEV7 A0A6D2Y9Y2	-

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Summary

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