Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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Supporting evidence
ID History
- Gene history

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Gene: RIF1 ENSPTRG00000012534

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Description

replication timing regulatory factor 1 [Source:VGNC Symbol;Acc:VGNC:2803]

Location

Chromosome 2B: 41,215,300-41,282,443 forward strand.

Pan_tro_3.0:CM000316.3

About this gene

This gene has 2 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000091450.1	RIF1-202	10171	2473aa	ENSPTRP00000093178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TVH6 A0A6D2Y1B4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000023239.6	RIF1-201	9771	2447aa	ENSPTRP00000021430.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WG16 H2QIT9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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