Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: USP39 ENSPTRG00000012141

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Description

ubiquitin specific peptidase 39 [Source:VGNC Symbol;Acc:VGNC:10805]

Location

Chromosome 2A: 87,323,327-87,360,053 forward strand.

Pan_tro_3.0:CM000315.3

About this gene

This gene has 6 transcripts (splice variants), 207 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000022564.5	USP39-203	2272	565aa	ENSPTRP00000020824.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WH59 H2QI99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000088374.1	USP39-206	1611	536aa	ENSPTRP00000081146.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SVZ2 A0A6D2XZ39	-
ENSPTRT00000104778.1	USP39-204	1467	488aa	ENSPTRP00000079454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SR74 A0A6D2WFU1	-
ENSPTRT00000091796.1	USP39-201	1464	487aa	ENSPTRP00000061645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RAK2 A0A6D2X7I7	-
ENSPTRT00000097471.1	USP39-205	1422	473aa	ENSPTRP00000081908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SY41	-
ENSPTRT00000100441.1	USP39-202	1389	462aa	ENSPTRP00000073397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S8P9 A0A6D2W6N9	-

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Summary

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