Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM54 ENSPTRG00000011759

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Description

tripartite motif containing 54 [Source:VGNC Symbol;Acc:VGNC:401]

Location

Chromosome 2A: 27,846,641-27,873,252 forward strand.

Pan_tro_3.0:CM000315.3

About this gene

This gene has 3 transcripts (splice variants), 149 orthologues and 87 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088953.1	TRIM54-202	1203	400aa	ENSPTRP00000085795.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T965 A0A6D2VZ32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000021901.5	TRIM54-201	2866	358aa	ENSPTRP00000020204.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WPD4 H2QHM3	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000086978.1	TRIM54-203	855	284aa	ENSPTRP00000084040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T494	-

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Summary

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