Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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Gene: SUPT5H ENSPTRG00000010971

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Description

SPT5 homolog, DSIF elongation factor subunit [Source:VGNC Symbol;Acc:VGNC:2237]

Location

Chromosome 19: 41,459,570-41,491,529 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 4 transcripts (splice variants) and 202 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000094514.1	SUPT5H-203	3270	1089aa	ENSPTRP00000082786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T0L3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000077121.1	SUPT5H-201	4561	1087aa	ENSPTRP00000082583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T154 A0A6D2W711	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000050180.5	SUPT5H-202	3717	1083aa	ENSPTRP00000042310.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8QFK1 A0A6D2WR57	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000090147.1	SUPT5H-204	3204	1067aa	ENSPTRP00000068043.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTJ1	-

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Summary

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