Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: CIRBP ENSPTRG00000010192

.

Description

cold inducible RNA binding protein [Source:VGNC Symbol;Acc:VGNC:57961]

Location

Chromosome 19: 1,246,292-1,254,297 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 4 transcripts (splice variants), 167 orthologues and 64 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000018713.5	CIRBP-203	744	247aa	ENSPTRP00000017326.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QEU2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000092042.1	CIRBP-202	1759	225aa	ENSPTRP00000081453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SWU9 A0A6D2XS69	-
ENSPTRT00000094197.1	CIRBP-201	1528	168aa	ENSPTRP00000092537.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8J263 A0A6D2Y7A6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000079768.1	CIRBP-204	609	202aa	ENSPTRP00000085021.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T718 A0A6D2WA96	-

.

Summary

.

.