Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CACNB1 ENSPTRG00000009085

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Description

calcium voltage-gated channel auxiliary subunit beta 1 [Source:VGNC Symbol;Acc:VGNC:9143]

Location

Chromosome 17: 18,416,047-18,440,879 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000101276.1	CACNB1-203	1881	626aa	ENSPTRP00000086255.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TBK2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000067610.3	CACNB1-201	3650	598aa	ENSPTRP00000059195.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VT10 H2RDQ2	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000087675.1	CACNB1-202	2142	523aa	ENSPTRP00000072833.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2X632 K7CJ88	-
ENSPTRT00000084125.1	CACNB1-204	1785	594aa	ENSPTRP00000074645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SC67	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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