Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPECC1 ENSPTRG00000008878

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Description

sperm antigen with calponin homology and coiled-coil domains 1 [Source:VGNC Symbol;Acc:VGNC:12690]

Location

Chromosome 17: 36,129,637-36,376,140 reverse strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000087859.1	SPECC1-201	5248	1068aa	ENSPTRP00000076259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8J798 A0A6D2YA78	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101129.1	SPECC1-204	5516	790aa	ENSPTRP00000075562.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SEV9 A0A6D2XUA9	-
ENSPTRT00000101831.1	SPECC1-202	3859	987aa	ENSPTRP00000077811.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W4S5 K7BL08	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000016370.6	SPECC1-203	2949	982aa	ENSPTRP00000015151.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QCF7	-

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Summary

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