Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SHMT1 ENSPTRG00000008851

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Description

serine hydroxymethyltransferase 1 [Source:VGNC Symbol;Acc:VGNC:9609]

Location

Chromosome 17: 39,246,735-39,281,446 forward strand.

Pan_tro_3.0:CM000331.3

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000081999.1	SHMT1-202	2050	483aa	ENSPTRP00000076664.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SI33	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000016308.4	SHMT1-201	2423	444aa	ENSPTRP00000015094.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QCE4	-
ENSPTRT00000100931.1	SHMT1-203	387	128aa	ENSPTRP00000081504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SWZ1	-

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Summary

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