Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS35 ENSPTRG00000008079

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Description

VPS35 retromer complex component [Source:VGNC Symbol;Acc:VGNC:9200]

Location

Chromosome 16: 37,079,748-37,110,949 reverse strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 5 transcripts (splice variants) and 214 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000014899.5	VPS35-201	4947	796aa	ENSPTRP00000013794.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VYW1 H2QB13	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSPTRT00000098403.1	VPS35-202	5640	455aa	ENSPTRP00000085777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T974	-
ENSPTRT00000081973.1	VPS35-203	2052	683aa	ENSPTRP00000077808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SLK4	-
ENSPTRT00000085880.1	VPS35-204	1656	551aa	ENSPTRP00000072182.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S6J6	-
ENSPTRT00000082753.1	VPS35-205	141	46aa	ENSPTRP00000075694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SF83 A0A6D2VYU3	-

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Summary

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