tropomyosin 1 [Source:VGNC Symbol;Acc:VGNC:14837]
Chromosome 15: 43,866,348-43,896,042 forward strand.
Pan_tro_3.0:CM000329.3
This gene has 10 transcripts (splice variants), 232 orthologues and 11 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSPTRT00000046896.4 | TPM1-206 | 1920 | 326aa | ENSPTRP00000041452.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A6D2W0U1 H2R0Y4 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| ENSPTRT00000097986.1 | TPM1-202 | 2530 | 284aa | ENSPTRP00000066224.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RNE9 A0A6D2Y1H4 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSPTRT00000091763.1 | TPM1-208 | 2481 | 248aa | ENSPTRP00000075153.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SDP2 | - |
| ENSPTRT00000103408.1 | TPM1-209 | 2125 | 245aa | ENSPTRP00000072511.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3S692 A0A6D2WSE7 | - |
| ENSPTRT00000089168.1 | TPM1-205 | 1794 | 284aa | ENSPTRP00000076151.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SGN2 A0A6D2W581 | APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, |
| ENSPTRT00000095535.1 | TPM1-203 | 1235 | 284aa | ENSPTRP00000082644.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3T066 A0A6D2XH57 | APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, |
| ENSPTRT00000082919.1 | TPM1-204 | 1156 | 287aa | ENSPTRP00000068010.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3RTH2 | - |
| ENSPTRT00000097311.1 | TPM1-201 | 897 | 298aa | ENSPTRP00000079903.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SSA0 | - |
| ENSPTRT00000086752.1 | TPM1-210 | 666 | 221aa | ENSPTRP00000078521.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3SPT0 | - |
| ENSPTRT00000089097.1 | TPM1-207 | 474 | 157aa | ENSPTRP00000071394.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A2I3S3H9 A0A6D2W8A3 | - |
