Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: TPM1 ENSPTRG00000007141

.

Description

tropomyosin 1 [Source:VGNC Symbol;Acc:VGNC:14837]

Location

Chromosome 15: 43,866,348-43,896,042 forward strand.

Pan_tro_3.0:CM000329.3

About this gene

This gene has 10 transcripts (splice variants), 221 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000046896.4	TPM1-202	1920	326aa	ENSPTRP00000041452.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W0U1 H2R0Y4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000097986.1	TPM1-206	2530	284aa	ENSPTRP00000066224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RNE9 A0A6D2Y1H4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000091763.1	TPM1-209	2481	248aa	ENSPTRP00000075153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SDP2	-
ENSPTRT00000103408.1	TPM1-208	2125	245aa	ENSPTRP00000072511.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S692 A0A6D2WSE7	-
ENSPTRT00000089168.1	TPM1-203	1794	284aa	ENSPTRP00000076151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SGN2 A0A6D2W581	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000095535.1	TPM1-204	1235	284aa	ENSPTRP00000082644.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T066 A0A6D2XH57	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000082919.1	TPM1-205	1156	287aa	ENSPTRP00000068010.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTH2	-
ENSPTRT00000097311.1	TPM1-201	897	298aa	ENSPTRP00000079903.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SSA0	-
ENSPTRT00000086752.1	TPM1-210	666	221aa	ENSPTRP00000078521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SPT0	-
ENSPTRT00000089097.1	TPM1-207	474	157aa	ENSPTRP00000071394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S3H9 A0A6D2W8A3	-

.

Summary

.

.