Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP28 ENSPTRG00000004299

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Description

ubiquitin specific peptidase 28 [Source:VGNC Symbol;Acc:VGNC:53187]

Location

Chromosome 11: 114,201,134-114,279,056 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 56 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000109408.1	USP28-201	4959	1192aa	ENSPTRP00000088705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3THG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000090899.1	USP28-203	4915	920aa	ENSPTRP00000070086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZD0 A0A6D2WNH2	-
ENSPTRT00000008002.5	USP28-202	4773	1130aa	ENSPTRP00000007384.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q4S9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000105704.1	USP28-204	3228	1075aa	ENSPTRP00000083466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T2K9	-

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Summary

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