Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PPFIA1 ENSPTRG00000004005

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Description

PTPRF interacting protein alpha 1 [Source:VGNC Symbol;Acc:VGNC:7660]

Location

Chromosome 11: 70,166,992-70,288,397 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 5 transcripts (splice variants), 214 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000100001.1	PPFIA1-201	5222	1267aa	ENSPTRP00000064702.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJ62	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000103819.1	PPFIA1-202	5147	1242aa	ENSPTRP00000066986.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RQM8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000007465.6	PPFIA1-203	5102	1227aa	ENSPTRP00000006886.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q4B7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000079764.1	PPFIA1-204	4956	1191aa	ENSPTRP00000076342.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SIN6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000111317.1	PPFIA1-205	1674	557aa	ENSPTRP00000067472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRZ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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