Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: PACS1 ENSPTRG00000003913

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Description

phosphofurin acidic cluster sorting protein 1 [Source:VGNC Symbol;Acc:VGNC:3078]

Location

Chromosome 11: 66,165,453-66,338,977 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 3 transcripts (splice variants), 219 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000093780.1	PACS1-201	2892	963aa	ENSPTRP00000093493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TWC7 A0A6D2WDX9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000007311.4	PACS1-202	4048	499aa	ENSPTRP00000006746.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XEZ3 H2Q458	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000090980.1	PACS1-203	2595	864aa	ENSPTRP00000084689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T625	-

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Summary

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