Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS51 ENSPTRG00000003863

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Description

VPS51 subunit of GARP complex [Source:VGNC Symbol;Acc:VGNC:3039]

Location

Chromosome 11: 65,130,250-65,151,873 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 4 transcripts (splice variants), 199 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000076503.1	VPS51-202	2367	788aa	ENSPTRP00000084304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T500	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000007220.3	VPS51-201	2600	782aa	ENSPTRP00000006657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WE20 H2Q419	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000077053.1	VPS51-203	504	167aa	ENSPTRP00000089001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TIB0	-
ENSPTRT00000082865.1	VPS51-204	243	81aa	ENSPTRP00000067535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RS83 A0A6D2WD73	-

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Summary

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