Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTUB1 ENSPTRG00000003817

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Description

OTU deubiquitinase, ubiquitin aldehyde binding 1 [Source:VGNC Symbol;Acc:VGNC:6538]

Location

Chromosome 11: 64,011,679-64,027,808 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 4 transcripts (splice variants), 207 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000090987.1	OTUB1-203	900	299aa	ENSPTRP00000074741.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SCN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000007113.5	OTUB1-201	2366	280aa	ENSPTRP00000006562.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2VTC2 H2Q3Y7	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000100816.1	OTUB1-204	819	272aa	ENSPTRP00000092101.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TSY9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081980.1	OTUB1-202	513	170aa	ENSPTRP00000076023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SG73 A0A6D2XNZ0	-

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Summary

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