Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Genetic Variation
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Gene: AMBRA1 ENSPTRG00000003546

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Description

autophagy and beclin 1 regulator 1 [Source:VGNC Symbol;Acc:VGNC:10235]

Location

Chromosome 11: 46,606,294-46,785,847 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 5 transcripts (splice variants) and 225 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000099378.1	AMBRA1-201	5618	1298aa	ENSPTRP00000086409.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TB21	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000006673.5	AMBRA1-202	4849	1269aa	ENSPTRP00000006158.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q3H6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000095200.1	AMBRA1-203	4756	1238aa	ENSPTRP00000090683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TN71	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000105543.1	AMBRA1-204	4666	1208aa	ENSPTRP00000074295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W276 K7AHU9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000094702.1	AMBRA1-205	3849	1282aa	ENSPTRP00000080763.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SW11	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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