Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC1A2 ENSPTRG00000003502

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Description

solute carrier family 1 member 2 [Source:VGNC Symbol;Acc:VGNC:7755]

Location

Chromosome 11: 35,359,718-35,516,663 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 6 transcripts (splice variants), 278 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000079961.1	SLC1A2-203	2321	574aa	ENSPTRP00000066333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RPT6 A0A6D2XBZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000087129.1	SLC1A2-202	1822	565aa	ENSPTRP00000069731.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8P3L2 A0A6D2WBB9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000089959.1	SLC1A2-201	1725	574aa	ENSPTRP00000067035.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRU5	-
ENSPTRT00000106634.1	SLC1A2-205	1701	566aa	ENSPTRP00000062746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RED0	-
ENSPTRT00000006599.5	SLC1A2-204	1662	553aa	ENSPTRP00000006085.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q3E9	-
ENSPTRT00000091723.1	SLC1A2-206	603	200aa	ENSPTRP00000063681.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RG63	-

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Summary

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