Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM6 ENSPTRG00000003257

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Description

tripartite motif containing 6 [Source:VGNC Symbol;Acc:VGNC:946]

Location

Chromosome 11: 5,392,130-5,440,920 forward strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 7 transcripts (splice variants), 80 orthologues and 87 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000096571.1	TRIM6-205	2526	841aa	ENSPTRP00000067040.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRV2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000082415.1	TRIM6-202	3463	516aa	ENSPTRP00000072660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7BXR4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000080675.1	TRIM6-201	3234	488aa	ENSPTRP00000073887.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SA06	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000006206.7	TRIM6-207	2316	488aa	ENSPTRP00000005727.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8P6P2 A0A6D2XXR9	-
ENSPTRT00000042614.6	TRIM6-203	1521	506aa	ENSPTRP00000040353.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R091	-
ENSPTRT00000104799.1	TRIM6-206	1389	462aa	ENSPTRP00000077251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SK19	-
ENSPTRT00000089085.1	TRIM6-204	1167	388aa	ENSPTRP00000077109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SKU0	-

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Summary

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