Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NR1I3 ENSPTRG00000001582

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Description

nuclear receptor subfamily 1 group I member 3 [Source:VGNC Symbol;Acc:VGNC:6922]

Location

Chromosome 1: 139,417,904-139,426,785 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 6 transcripts (splice variants), 563 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088386.1	NR1I3-201	1815	357aa	ENSPTRP00000075465.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JAS3 A0A6D2VUM5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000110148.1	NR1I3-203	1683	314aa	ENSPTRP00000064153.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RIF5 A0A6D2XL66	-
ENSPTRT00000078629.1	NR1I3-202	1663	324aa	ENSPTRP00000081589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SX59 A0A6D2X2Z7	-
ENSPTRT00000002884.6	NR1I3-204	1047	348aa	ENSPTRP00000002647.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2Q0G6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000102651.1	NR1I3-205	444	147aa	ENSPTRP00000068568.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JAT6 A0A6D2WU98	-
ENSPTRT00000078743.1	NR1I3-206	360	119aa	ENSPTRP00000080683.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JAV3 A0A6D2XCH5	-

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Summary

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