Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPRF ENSPTRG00000000641

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Description

protein tyrosine phosphatase receptor type F [Source:VGNC Symbol;Acc:VGNC:9889]

Location

Chromosome 1: 43,016,473-43,109,577 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 267 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000108829.1	PTPRF-203	5745	1914aa	ENSPTRP00000073692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S9G7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000049482.3	PTPRF-201	7724	1907aa	ENSPTRP00000040758.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y9A3 H2R0H9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000105112.1	PTPRF-202	7697	1898aa	ENSPTRP00000078056.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2W3M4 K7D8P0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000098653.1	PTPRF-204	789	262aa	ENSPTRP00000064730.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8LZN7 A0A6D2Y8C1	-

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Summary

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