Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRDM2 ENSPTRG00000000185

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Description

PR/SET domain 2 [Source:VGNC Symbol;Acc:VGNC:8095]

Location

Chromosome 1: 12,815,510-12,925,646 forward strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 5 transcripts (splice variants), 215 orthologues and 58 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000068143.3	PRDM2-201	7666	1719aa	ENSPTRP00000059740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XS18 H2RE19	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000101173.1	PRDM2-202	7167	1683aa	ENSPTRP00000075777.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y840 K7B5P1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000099751.1	PRDM2-204	5007	1668aa	ENSPTRP00000065669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RLZ3	-
ENSPTRT00000104869.1	PRDM2-203	2637	226aa	ENSPTRP00000067341.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RRL8 A0A6D2W0E7	-
ENSPTRT00000094345.1	PRDM2-205	189	62aa	ENSPTRP00000086574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JT16 A0A6D2XYC8	-

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Summary

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