Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CSTF2 ENSPTRG00000022090

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Description

cleavage stimulation factor subunit 2 [Source:VGNC Symbol;Acc:VGNC:10175]

Location

Chromosome X: 100,456,564-100,481,006 forward strand.

Pan_tro_3.0:CM000336.3

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000103529.1	CSTF2-202	5947	597aa	ENSPTRP00000067955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RTC1 A0A6D2WJJ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000098930.1	CSTF2-201	5891	577aa	ENSPTRP00000063788.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y0D3 K7CVU3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000041140.6	CSTF2-203	1719	572aa	ENSPTRP00000038004.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QYW2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000083464.1	CSTF2-204	1659	552aa	ENSPTRP00000084076.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4C2	-

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Summary

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